HL_9GFT_143
3D structure
- PDB id
- 9GFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAGCGGUAAG
- Length
- 11 nucleotides
- Bulged bases
- 9GFT|1|M|C|16, 9GFT|1|M|G|17, 9GFT|1|M|G|18, 9GFT|1|M|U|19
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9GFT_143 not in the Motif Atlas
- Homologous match to HL_4JYZ_001
- Geometric discrepancy: 0.194
- The information below is about HL_4JYZ_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_40252.4
- Basepair signature
- cWW-tSH-cWS-F
- Number of instances in this motif group
- 5
Unit IDs
9GFT|1|M|C|12
9GFT|1|M|A|13
9GFT|1|M|A|14
9GFT|1|M|G|15
9GFT|1|M|C|16
9GFT|1|M|G|17
9GFT|1|M|G|18
9GFT|1|M|U|19
9GFT|1|M|A|20
9GFT|1|M|A|21
9GFT|1|M|G|22
Current chains
- Chain M
- P-site tRNA
Nearby chains
- Chain N
- Large subunit ribosomal RNA; LSU rRNA
- Chain S
- Large ribosomal subunit protein uL5
Coloring options: