HL_9GFT_145
3D structure
- PDB id
- 9GFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUUCGAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9GFT_145 not in the Motif Atlas
- Homologous match to HL_7MRL_003
- Geometric discrepancy: 0.1206
- The information below is about HL_7MRL_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
9GFT|1|M|G|52
9GFT|1|M|U|53
9GFT|1|M|U|54
9GFT|1|M|C|55
9GFT|1|M|G|56
9GFT|1|M|A|57
9GFT|1|M|A|58
9GFT|1|M|U|59
9GFT|1|M|C|60
Current chains
- Chain M
- P-site tRNA
Nearby chains
- Chain N
- Large subunit ribosomal RNA; LSU rRNA
- Chain S
- Large ribosomal subunit protein uL5
- Chain Z
- 50S ribosomal protein L16
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