3D structure

PDB id
9GFT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HrpA-bound E. coli disome, Class I
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CUGGAAAG
Length
8 nucleotides
Bulged bases
9GFT|1|N|A|311
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9GFT_154 not in the Motif Atlas
Homologous match to HL_5J7L_142
Geometric discrepancy: 0.1325
The information below is about HL_5J7L_142
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_01609.3
Basepair signature
cWW-tWH-F-F-F
Number of instances in this motif group
18

Unit IDs

9GFT|1|N|C|305
9GFT|1|N|U|306
9GFT|1|N|G|307
9GFT|1|N|G|308
9GFT|1|N|A|309
9GFT|1|N|A|310
9GFT|1|N|A|311
9GFT|1|N|G|312

Current chains

Chain N
23S RNA

Nearby chains

Chain h
Large ribosomal subunit protein uL24

Coloring options:


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