HL_9GFT_168

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

9GFT|1|N|A|781, 9GFT|1|N|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GFT_168 not in the Motif Atlas

Homologous match to HL_7A0S_023

Geometric discrepancy: 0.1035

The information below is about HL_7A0S_023

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

9GFT|1|N|U|779
9GFT|1|N|G|780
9GFT|1|N|A|781
9GFT|1|N|A|782
9GFT|1|N|A|783
9GFT|1|N|G|784
9GFT|1|N|G|785

Current chains

Chain N

23S RNA

Nearby chains

Chain P

Large ribosomal subunit protein uL2