HL_9GGR_014

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GGR_014 not in the Motif Atlas

Homologous match to HL_4LFB_014

Geometric discrepancy: 0.3243

The information below is about HL_4LFB_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_92337.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

3

Unit IDs

9GGR|1|0|G|617
9GGR|1|0|C|618
9GGR|1|0|U|619
9GGR|1|0|C|620
9GGR|1|0|A|621
9GGR|1|0|A|622
9GGR|1|0|C|623

Current chains

Chain 0

16S ribosomal RNA

Nearby chains

Chain 3

Small ribosomal subunit protein uS4

Chain I

Small ribosomal subunit protein bS16