HL_9GGR_064

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

9GGR|1|AA|C|1136

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GGR_064 not in the Motif Atlas

Homologous match to HL_4LFB_026

Geometric discrepancy: 0.3123

The information below is about HL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92935.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

5

Unit IDs

9GGR|1|AA|G|1134
9GGR|1|AA|U|1135
9GGR|1|AA|C|1136
9GGR|1|AA|C|1137
9GGR|1|AA|G|1138
9GGR|1|AA|G|1139
9GGR|1|AA|C|1140

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain A2

ATP-dependent RNA helicase HrpA

Chain AI

Small ribosomal subunit protein uS9