HL_9GGR_081

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GGR_081 not in the Motif Atlas

Homologous match to HL_4WF9_008

Geometric discrepancy: 0.1401

The information below is about HL_4WF9_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76371.1

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

13

Unit IDs

9GGR|1|AV|C|246
9GGR|1|AV|G|247
9GGR|1|AV|G|248
9GGR|1|AV|C|249
9GGR|1|AV|G|250
9GGR|1|AV|A|251
9GGR|1|AV|G|252

Current chains

Chain AV

23S ribosomal RNA

Nearby chains

Chain Ag

Large ribosomal subunit protein uL15

Chain As

Large ribosomal subunit protein bL28

Chain Ay

Large ribosomal subunit protein bL35