HL_9GGR_084

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

9GGR|1|AV|G|329, 9GGR|1|AV|A|330, 9GGR|1|AV|C|331

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GGR_084 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1491

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

9GGR|1|AV|G|327
9GGR|1|AV|U|328
9GGR|1|AV|G|329
9GGR|1|AV|A|330
9GGR|1|AV|C|331
9GGR|1|AV|A|332
9GGR|1|AV|G|333
9GGR|1|AV|C|334
9GGR|1|AV|C|335

Current chains

Chain AV

23S ribosomal RNA

Nearby chains

Chain AZ

Large ribosomal subunit protein uL4

Chain Ap

Large ribosomal subunit protein uL24