HL_9GGR_088

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

9GGR|1|AV|C|490

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GGR_088 not in the Motif Atlas

Homologous match to HL_5J7L_148

Geometric discrepancy: 0.2199

The information below is about HL_5J7L_148

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9GGR|1|AV|C|487
9GGR|1|AV|G|488
9GGR|1|AV|G|489
9GGR|1|AV|C|490
9GGR|1|AV|G|491
9GGR|1|AV|A|492
9GGR|1|AV|G|493

Current chains

Chain AV

23S ribosomal RNA

Nearby chains

Chain An

Large ribosomal subunit protein uL22