HL_9GGR_107

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

9GGR|1|AV|U|1396, 9GGR|1|AV|U|1397

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GGR_107 not in the Motif Atlas

Homologous match to HL_4WF9_035

Geometric discrepancy: 0.2022

The information below is about HL_4WF9_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

14

Unit IDs

9GGR|1|AV|G|1389
9GGR|1|AV|U|1390
9GGR|1|AV|U|1391
9GGR|1|AV|A|1392
9GGR|1|AV|A|1393
9GGR|1|AV|U|1394
9GGR|1|AV|A|1395
9GGR|1|AV|U|1396
9GGR|1|AV|U|1397
9GGR|1|AV|C|1398

Current chains

Chain AV

23S ribosomal RNA

Nearby chains

Chain Ao

Large ribosomal subunit protein uL23