HL_9GGR_118

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

9GGR|1|AV|A|1808

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GGR_118 not in the Motif Atlas

Homologous match to HL_5J7L_179

Geometric discrepancy: 0.2271

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

9GGR|1|AV|C|1806
9GGR|1|AV|G|1807
9GGR|1|AV|A|1808
9GGR|1|AV|A|1809
9GGR|1|AV|A|1810
9GGR|1|AV|G|1811

Current chains

Chain AV

23S ribosomal RNA

Nearby chains

Chain AX

Large ribosomal subunit protein uL2

Chain As

Large ribosomal subunit protein bL28