HL_9GGR_120
3D structure
- PDB id
- 9GGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUAACUAUAAC
- Length
- 11 nucleotides
- Bulged bases
- 9GGR|1|AV|A|1913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9GGR_120 not in the Motif Atlas
- Homologous match to HL_9DFE_046
- Geometric discrepancy: 0.3728
- The information below is about HL_9DFE_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_82185.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9GGR|1|AV|G|1910
9GGR|1|AV|U|1911
9GGR|1|AV|A|1912
9GGR|1|AV|A|1913
9GGR|1|AV|C|1914
9GGR|1|AV|U|1915
9GGR|1|AV|A|1916
9GGR|1|AV|U|1917
9GGR|1|AV|A|1918
9GGR|1|AV|A|1919
9GGR|1|AV|C|1920
Current chains
- Chain AV
- 23S ribosomal RNA
Nearby chains
- Chain A3
- Transfer RNA; tRNA
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain w
- messenger RNA
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