HL_9GGR_123

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACGCCAGU

Length

8 nucleotides

Bulged bases

9GGR|1|AV|C|2145, 9GGR|1|AV|C|2146, 9GGR|1|AV|A|2147

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GGR_123 not in the Motif Atlas

Homologous match to HL_5J7L_184

Geometric discrepancy: 0.5802

The information below is about HL_5J7L_184

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79299.1

Basepair signature

cWW-tSW-R

Number of instances in this motif group

44

Unit IDs

9GGR|1|AV|A|2142
9GGR|1|AV|C|2143
9GGR|1|AV|G|2144
9GGR|1|AV|C|2145
9GGR|1|AV|C|2146
9GGR|1|AV|A|2147
9GGR|1|AV|G|2148
9GGR|1|AV|U|2149

Current chains

Chain AV

23S ribosomal RNA

Nearby chains