HL_9GGR_124

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAAUCC

Length

7 nucleotides

Bulged bases

9GGR|1|AV|A|2211, 9GGR|1|AV|U|2213

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GGR_124 not in the Motif Atlas

Homologous match to HL_5J7L_185

Geometric discrepancy: 0.2073

The information below is about HL_5J7L_185

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

9GGR|1|AV|G|2209
9GGR|1|AV|U|2210
9GGR|1|AV|A|2211
9GGR|1|AV|A|2212
9GGR|1|AV|U|2213
9GGR|1|AV|C|2214
9GGR|1|AV|C|2215

Current chains

Chain AV

23S ribosomal RNA

Nearby chains

Chain AX

Large ribosomal subunit protein uL2