HL_9GGR_126

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

9GGR|1|AV|A|2268, 9GGR|1|AV|C|2275

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GGR_126 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.1311

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

9GGR|1|AV|C|2264
9GGR|1|AV|U|2265
9GGR|1|AV|A|2266
9GGR|1|AV|A|2267
9GGR|1|AV|A|2268
9GGR|1|AV|G|2269
9GGR|1|AV|A|2270
9GGR|1|AV|G|2271
9GGR|1|AV|U|2272
9GGR|1|AV|A|2273
9GGR|1|AV|A|2274
9GGR|1|AV|C|2275
9GGR|1|AV|G|2276

Current chains

Chain AV

23S ribosomal RNA

Nearby chains

Chain Ah

50S ribosomal protein L16

Chain Ar

Large ribosomal subunit protein bL27