HL_9GGR_133

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

9GGR|1|AV|G|2529

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GGR_133 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.1452

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

9GGR|1|AV|U|2528
9GGR|1|AV|G|2529
9GGR|1|AV|A|2530
9GGR|1|AV|A|2531
9GGR|1|AV|G|2532
9GGR|1|AV|U|2533
9GGR|1|AV|A|2534
9GGR|1|AV|G|2535

Current chains

Chain AV

23S ribosomal RNA

Nearby chains

Chain Ab

Large ribosomal subunit protein uL6

Chain Az

Large ribosomal subunit protein bL36A