HL_9GGR_138
3D structure
- PDB id
- 9GGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUGAAAGCAUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 9GGR|1|AV|G|2751, 9GGR|1|AV|C|2755
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9GGR_138 not in the Motif Atlas
- Homologous match to HL_5J7L_199
- Geometric discrepancy: 0.1788
- The information below is about HL_5J7L_199
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_74055.2
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 7
Unit IDs
9GGR|1|AV|C|2745
9GGR|1|AV|U|2746
9GGR|1|AV|G|2747
9GGR|1|AV|A|2748
9GGR|1|AV|A|2749
9GGR|1|AV|A|2750
9GGR|1|AV|G|2751
9GGR|1|AV|C|2752
9GGR|1|AV|A|2753
9GGR|1|AV|U|2754
9GGR|1|AV|C|2755
9GGR|1|AV|U|2756
9GGR|1|AV|A|2757
9GGR|1|AV|A|2758
9GGR|1|AV|G|2759
Current chains
- Chain AV
- 23S ribosomal RNA
Nearby chains
- Chain Ab
- Large ribosomal subunit protein uL6
- Chain Ae
- Large ribosomal subunit protein uL13
- Chain Az
- Large ribosomal subunit protein bL36A
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