HL_9GGR_146

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUCGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GGR_146 not in the Motif Atlas

Homologous match to HL_8VU0_003

Geometric discrepancy: 0.1363

The information below is about HL_8VU0_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

96

Unit IDs

9GGR|1|M|G|52
9GGR|1|M|U|53
9GGR|1|M|U|54
9GGR|1|M|C|55
9GGR|1|M|G|56
9GGR|1|M|A|57
9GGR|1|M|A|58
9GGR|1|M|U|59
9GGR|1|M|C|60

Current chains

Chain M

P-site tRNA

Nearby chains

Chain N

Large subunit ribosomal RNA; LSU rRNA

Chain S

Large ribosomal subunit protein uL5

Chain Z

50S ribosomal protein L16