HL_9GGR_159

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

9GGR|1|N|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GGR_159 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.0907

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9GGR|1|N|G|410
9GGR|1|N|G|411
9GGR|1|N|A|412
9GGR|1|N|C|413
9GGR|1|N|C|414
9GGR|1|N|A|415
9GGR|1|N|U|416
9GGR|1|N|C|417

Current chains

Chain N

23S ribosomal RNA

Nearby chains

Chain Y

Large ribosomal subunit protein uL15