HL_9GGR_169

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

9GGR|1|N|A|781, 9GGR|1|N|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GGR_169 not in the Motif Atlas

Homologous match to HL_7A0S_023

Geometric discrepancy: 0.1127

The information below is about HL_7A0S_023

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

9GGR|1|N|U|779
9GGR|1|N|G|780
9GGR|1|N|A|781
9GGR|1|N|A|782
9GGR|1|N|A|783
9GGR|1|N|G|784
9GGR|1|N|G|785

Current chains

Chain N

23S ribosomal RNA

Nearby chains

Chain P

Large ribosomal subunit protein uL2