HL_9GGR_190

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

9GGR|1|N|A|1780, 9GGR|1|N|U|1781, 9GGR|1|N|U|1782, 9GGR|1|N|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GGR_190 not in the Motif Atlas

Homologous match to HL_4WF9_043

Geometric discrepancy: 0.1028

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9GGR|1|N|U|1777
9GGR|1|N|U|1778
9GGR|1|N|U|1779
9GGR|1|N|A|1780
9GGR|1|N|U|1781
9GGR|1|N|U|1782
9GGR|1|N|A|1783
9GGR|1|N|A|1784
9GGR|1|N|A|1785
9GGR|1|N|A|1786
9GGR|1|N|A|1787

Current chains

Chain N

23S ribosomal RNA

Nearby chains

Chain P

Large ribosomal subunit protein uL2

Chain p

Large ribosomal subunit protein bL34

Chain s

VemP nascent chain