HL_9GHA_002
3D structure
- PDB id
- 9GHA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.24 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9GHA_002 not in the Motif Atlas
- Homologous match to HL_7U2I_104
- Geometric discrepancy: 0.13
- The information below is about HL_7U2I_104
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.6
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
9GHA|1|8|G|31
9GHA|1|8|C|32
9GHA|1|8|U|33
9GHA|1|8|C|34
9GHA|1|8|A|35
9GHA|1|8|U|36
9GHA|1|8|A|37
9GHA|1|8|A|38
9GHA|1|8|C|39
Current chains
- Chain 8
- tRNA
Nearby chains
- Chain 9
- mRNA
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain I
- 30S ribosomal protein S9
- Chain K
- Small ribosomal subunit protein uS11
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