HL_9GHA_049

3D structure

PDB id

9GHA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

9GHA|1|a|C|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHA_049 not in the Motif Atlas

Homologous match to HL_5J7L_148

Geometric discrepancy: 0.0989

The information below is about HL_5J7L_148

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9GHA|1|a|C|487
9GHA|1|a|G|488
9GHA|1|a|G|489
9GHA|1|a|C|490
9GHA|1|a|G|491
9GHA|1|a|A|492
9GHA|1|a|G|493

Current chains

Chain a

23S rRNA

Nearby chains

Chain r

50S ribosomal protein L22