3D structure

PDB id
9GHA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.24 Å

Loop

Sequence
G(PSU)AAC(3TD)A(PSU)AAC
Length
11 nucleotides
Bulged bases
9GHA|1|a|A|1913
QA status
Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9GHA_080 not in the Motif Atlas
Homologous match to HL_9DFE_046
Geometric discrepancy: 0.1938
The information below is about HL_9DFE_046
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_25847.2
Basepair signature
cWW-F-cSH-tHW-F-F-F
Number of instances in this motif group
3

Unit IDs

9GHA|1|a|G|1910
9GHA|1|a|PSU|1911
9GHA|1|a|A|1912
9GHA|1|a|A|1913
9GHA|1|a|C|1914
9GHA|1|a|3TD|1915
9GHA|1|a|A|1916
9GHA|1|a|PSU|1917
9GHA|1|a|A|1918
9GHA|1|a|A|1919
9GHA|1|a|C|1920

Current chains

Chain a
23S rRNA

Nearby chains

Chain A
Small subunit ribosomal RNA; SSU rRNA
Chain W
Elongation factor G

Coloring options:


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