HL_9GHA_090

3D structure

PDB id

9GHA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

9GHA|1|a|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHA_090 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.0553

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9GHA|1|a|U|2404
9GHA|1|a|G|2405
9GHA|1|a|A|2406
9GHA|1|a|A|2407
9GHA|1|a|U|2408
9GHA|1|a|G|2409
9GHA|1|a|G|2410
9GHA|1|a|A|2411
9GHA|1|a|A|2412
9GHA|1|a|G|2413

Current chains

Chain a

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L15