HL_9GHA_097

3D structure

PDB id

9GHA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9GHA|1|a|G|2751, 9GHA|1|a|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHA_097 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0633

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

9GHA|1|a|C|2745
9GHA|1|a|U|2746
9GHA|1|a|G|2747
9GHA|1|a|A|2748
9GHA|1|a|A|2749
9GHA|1|a|A|2750
9GHA|1|a|G|2751
9GHA|1|a|C|2752
9GHA|1|a|A|2753
9GHA|1|a|U|2754
9GHA|1|a|C|2755
9GHA|1|a|U|2756
9GHA|1|a|A|2757
9GHA|1|a|A|2758
9GHA|1|a|G|2759

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain g

50S ribosomal protein L6

Chain i

50S ribosomal protein L13