HL_9GHB_096

3D structure

PDB id

9GHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G in post-translocational state (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9GHB|1|a|G|2751, 9GHB|1|a|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHB_096 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0575

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

9GHB|1|a|C|2745
9GHB|1|a|U|2746
9GHB|1|a|G|2747
9GHB|1|a|A|2748
9GHB|1|a|A|2749
9GHB|1|a|A|2750
9GHB|1|a|G|2751
9GHB|1|a|C|2752
9GHB|1|a|A|2753
9GHB|1|a|U|2754
9GHB|1|a|C|2755
9GHB|1|a|U|2756
9GHB|1|a|A|2757
9GHB|1|a|A|2758
9GHB|1|a|G|2759

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain g

50S ribosomal protein L6

Chain i

50S ribosomal protein L13