HL_9GHC_092

3D structure

PDB id

9GHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-release fusidic acid-locked Escherichia coli 70S ribosome with Staphylococus aureus EF-G and FusB (FusB-EF-G-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

C(OMU)GUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHC_092 not in the Motif Atlas

Homologous match to HL_9DFE_060

Geometric discrepancy: 0.1026

The information below is about HL_9DFE_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

9GHC|1|a|C|2551
9GHC|1|a|OMU|2552
9GHC|1|a|G|2553
9GHC|1|a|U|2554
9GHC|1|a|U|2555
9GHC|1|a|C|2556
9GHC|1|a|G|2557

Current chains

Chain a

23S rRNA

Nearby chains