HL_9GHD_048

3D structure

PDB id

9GHD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

9GHD|1|a|C|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHD_048 not in the Motif Atlas

Homologous match to HL_5J7L_148

Geometric discrepancy: 0.0746

The information below is about HL_5J7L_148

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9GHD|1|a|C|487
9GHD|1|a|G|488
9GHD|1|a|G|489
9GHD|1|a|C|490
9GHD|1|a|G|491
9GHD|1|a|A|492
9GHD|1|a|G|493

Current chains

Chain a

23S rRNA

Nearby chains

Chain r

50S ribosomal protein L22