3D structure

PDB id
9GHD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.41 Å

Loop

Sequence
UUUAUUAAAAA
Length
11 nucleotides
Bulged bases
9GHD|1|a|A|1780, 9GHD|1|a|U|1781, 9GHD|1|a|U|1782, 9GHD|1|a|A|1786
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9GHD_076 not in the Motif Atlas
Homologous match to HL_5J7L_178
Geometric discrepancy: 0.0589
The information below is about HL_5J7L_178
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_01962.2
Basepair signature
cWW-tWH-tWH-F
Number of instances in this motif group
6

Unit IDs

9GHD|1|a|U|1777
9GHD|1|a|U|1778
9GHD|1|a|U|1779
9GHD|1|a|A|1780
9GHD|1|a|U|1781
9GHD|1|a|U|1782
9GHD|1|a|A|1783
9GHD|1|a|A|1784
9GHD|1|a|A|1785
9GHD|1|a|A|1786
9GHD|1|a|A|1787

Current chains

Chain a
23S rRNA

Nearby chains

Chain 1
Large ribosomal subunit protein bL34
Chain c
50S ribosomal protein L2

Coloring options:


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