HL_9GHD_089

3D structure

PDB id

9GHD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

9GHD|1|a|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHD_089 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.0638

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9GHD|1|a|U|2404
9GHD|1|a|G|2405
9GHD|1|a|A|2406
9GHD|1|a|A|2407
9GHD|1|a|U|2408
9GHD|1|a|G|2409
9GHD|1|a|G|2410
9GHD|1|a|A|2411
9GHD|1|a|A|2412
9GHD|1|a|G|2413

Current chains

Chain a

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L15