HL_9GHE_061

3D structure

PDB id

9GHE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the Escherichia coli 70S ribosome (FusB-70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.87 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHE_061 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.1967

The information below is about HL_6PRV_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

12

Unit IDs

9GHE|1|a|C|1092
9GHE|1|a|G|1093
9GHE|1|a|U|1094
9GHE|1|a|A|1095
9GHE|1|a|A|1096
9GHE|1|a|U|1097
9GHE|1|a|A|1098
9GHE|1|a|G|1099

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain g

50S ribosomal protein L6