HL_9GHE_089

3D structure

PDB id

9GHE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the Escherichia coli 70S ribosome (FusB-70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.87 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

9GHE|1|a|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHE_089 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.0539

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9GHE|1|a|U|2404
9GHE|1|a|G|2405
9GHE|1|a|A|2406
9GHE|1|a|A|2407
9GHE|1|a|U|2408
9GHE|1|a|G|2409
9GHE|1|a|G|2410
9GHE|1|a|A|2411
9GHE|1|a|A|2412
9GHE|1|a|G|2413

Current chains

Chain a

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L15