HL_9GHE_096

3D structure

PDB id

9GHE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the Escherichia coli 70S ribosome (FusB-70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.87 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9GHE|1|a|G|2751, 9GHE|1|a|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHE_096 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0542

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

9GHE|1|a|C|2745
9GHE|1|a|U|2746
9GHE|1|a|G|2747
9GHE|1|a|A|2748
9GHE|1|a|A|2749
9GHE|1|a|A|2750
9GHE|1|a|G|2751
9GHE|1|a|C|2752
9GHE|1|a|A|2753
9GHE|1|a|U|2754
9GHE|1|a|C|2755
9GHE|1|a|U|2756
9GHE|1|a|A|2757
9GHE|1|a|A|2758
9GHE|1|a|G|2759

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain g

50S ribosomal protein L6

Chain i

50S ribosomal protein L13