HL_9GHF_067

3D structure

PDB id

9GHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

9GHF|1|a|A|1453, 9GHF|1|a|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHF_067 not in the Motif Atlas

Homologous match to HL_5J7L_169

Geometric discrepancy: 0.0902

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9GHF|1|a|C|1451
9GHF|1|a|G|1452
9GHF|1|a|A|1453
9GHF|1|a|C|1454
9GHF|1|a|G|1455
9GHF|1|a|G|1456
9GHF|1|a|U|1457
9GHF|1|a|U|1458
9GHF|1|a|G|1459

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L17