HL_9GHF_079
3D structure
- PDB id
- 9GHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- G(PSU)AAC(3TD)A(PSU)AAC
- Length
- 11 nucleotides
- Bulged bases
- 9GHF|1|a|A|1913
- QA status
- Modified nucleotides: PSU, 3TD
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9GHF_079 not in the Motif Atlas
- Homologous match to HL_9DFE_046
- Geometric discrepancy: 0.1304
- The information below is about HL_9DFE_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_25847.2
- Basepair signature
- cWW-F-cSH-tHW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9GHF|1|a|G|1910
9GHF|1|a|PSU|1911
9GHF|1|a|A|1912
9GHF|1|a|A|1913
9GHF|1|a|C|1914
9GHF|1|a|3TD|1915
9GHF|1|a|A|1916
9GHF|1|a|PSU|1917
9GHF|1|a|A|1918
9GHF|1|a|A|1919
9GHF|1|a|C|1920
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain V
- Far1
- Chain Z
- Transfer RNA; tRNA
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