HL_9GHF_085

3D structure

PDB id

9GHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUCGGACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHF_085 not in the Motif Atlas

Homologous match to HL_5J7L_219

Geometric discrepancy: 0.0966

The information below is about HL_5J7L_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9GHF|1|a|G|2304
9GHF|1|a|U|2305
9GHF|1|a|C|2306
9GHF|1|a|G|2307
9GHF|1|a|G|2308
9GHF|1|a|A|2309
9GHF|1|a|C|2310
9GHF|1|a|A|2311
9GHF|1|a|U|2312

Current chains

Chain a

23S rRNA

Nearby chains

Chain f

50S ribosomal protein L5