HL_9GHF_091

3D structure

PDB id

9GHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

9GHF|1|a|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHF_091 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.0707

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

9GHF|1|a|U|2528
9GHF|1|a|G|2529
9GHF|1|a|A|2530
9GHF|1|a|A|2531
9GHF|1|a|G|2532
9GHF|1|a|U|2533
9GHF|1|a|A|2534
9GHF|1|a|G|2535

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain V

Far1

Chain g

50S ribosomal protein L6