HL_9GHF_096

3D structure

PDB id

9GHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9GHF|1|a|G|2751, 9GHF|1|a|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHF_096 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0625

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

9GHF|1|a|C|2745
9GHF|1|a|U|2746
9GHF|1|a|G|2747
9GHF|1|a|A|2748
9GHF|1|a|A|2749
9GHF|1|a|A|2750
9GHF|1|a|G|2751
9GHF|1|a|C|2752
9GHF|1|a|A|2753
9GHF|1|a|U|2754
9GHF|1|a|C|2755
9GHF|1|a|U|2756
9GHF|1|a|A|2757
9GHF|1|a|A|2758
9GHF|1|a|G|2759

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain g

50S ribosomal protein L6

Chain i

50S ribosomal protein L13