HL_9GHG_004

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

AGUUAUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHG_004 not in the Motif Atlas

Homologous match to HL_4WF9_004

Geometric discrepancy: 0.2223

The information below is about HL_4WF9_004

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.1

Basepair signature

cWW-F

Number of instances in this motif group

10

Unit IDs

9GHG|1|A|A|136
9GHG|1|A|G|137
9GHG|1|A|U|138
9GHG|1|A|U|139
9GHG|1|A|A|140
9GHG|1|A|U|141
9GHG|1|A|G|142
9GHG|1|A|U|143

Current chains

Chain A

23S rRNA

Nearby chains

Chain W

50S ribosomal protein L23