HL_9GHG_019

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

AGUAAAU

Length

7 nucleotides

Bulged bases

9GHG|1|A|A|658

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHG_019 not in the Motif Atlas

Geometric match to HL_3V7E_003

Geometric discrepancy: 0.1606

The information below is about HL_3V7E_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9GHG|1|A|A|655
9GHG|1|A|G|656
9GHG|1|A|U|657
9GHG|1|A|A|658
9GHG|1|A|A|659
9GHG|1|A|A|660
9GHG|1|A|U|661

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L4