HL_9GHG_065

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9GHG|1|A|G|2778, 9GHG|1|A|C|2782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHG_065 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0651

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

9GHG|1|A|C|2772
9GHG|1|A|U|2773
9GHG|1|A|G|2774
9GHG|1|A|A|2775
9GHG|1|A|A|2776
9GHG|1|A|A|2777
9GHG|1|A|G|2778
9GHG|1|A|C|2779
9GHG|1|A|A|2780
9GHG|1|A|U|2781
9GHG|1|A|C|2782
9GHG|1|A|U|2783
9GHG|1|A|A|2784
9GHG|1|A|A|2785
9GHG|1|A|G|2786

Current chains

Chain A

23S rRNA

Nearby chains

Chain 9

50S ribosomal protein L36

Chain K

50S ribosomal protein L6

Chain M

50S ribosomal protein L13