HL_9GHG_081

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHG_081 not in the Motif Atlas

Homologous match to HL_5J7L_003

Geometric discrepancy: 0.0987

The information below is about HL_5J7L_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9GHG|1|a|G|158
9GHG|1|a|G|159
9GHG|1|a|A|160
9GHG|1|a|A|161
9GHG|1|a|A|162
9GHG|1|a|C|163

Current chains

Chain a

23S rRNA

Nearby chains

Chain S

50S ribosomal protein L19

Chain u

30S ribosomal protein S20