HL_9GHG_082

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CGCAUG

Length

6 nucleotides

Bulged bases

9GHG|1|a|C|195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHG_082 not in the Motif Atlas

Geometric match to HL_3NDB_001

Geometric discrepancy: 0.2615

The information below is about HL_3NDB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_57875.1

Basepair signature

cWW-F-F

Number of instances in this motif group

5

Unit IDs

9GHG|1|a|C|193
9GHG|1|a|G|194
9GHG|1|a|C|195
9GHG|1|a|A|196
9GHG|1|a|U|197
9GHG|1|a|G|198

Current chains

Chain a

23S rRNA

Nearby chains

Chain r

30S ribosomal protein S17