HL_9GHG_083

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

UCUUG

Length

5 nucleotides

Bulged bases

9GHG|1|a|C|219, 9GHG|1|a|U|221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHG_083 not in the Motif Atlas

Geometric match to HL_6MSF_001

Geometric discrepancy: 0.1642

The information below is about HL_6MSF_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

9GHG|1|a|U|218
9GHG|1|a|C|219
9GHG|1|a|U|220
9GHG|1|a|U|221
9GHG|1|a|G|222

Current chains

Chain a

23S rRNA

Nearby chains