HL_9GHG_084

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

9GHG|1|a|G|274

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHG_084 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.1537

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9GHG|1|a|G|267
9GHG|1|a|G|268
9GHG|1|a|U|269
9GHG|1|a|A|270
9GHG|1|a|A|271
9GHG|1|a|C|272
9GHG|1|a|G|273
9GHG|1|a|G|274
9GHG|1|a|C|275

Current chains

Chain a

23S rRNA

Nearby chains

Chain r

30S ribosomal protein S17

Chain u

30S ribosomal protein S20