HL_9GHG_089

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9GHG|1|a|U|429

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHG_089 not in the Motif Atlas

Homologous match to HL_4LFB_011

Geometric discrepancy: 0.1474

The information below is about HL_4LFB_011

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

49

Unit IDs

9GHG|1|a|C|427
9GHG|1|a|U|428
9GHG|1|a|U|429
9GHG|1|a|C|430
9GHG|1|a|G|431
9GHG|1|a|G|432

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

30S ribosomal protein S3

Chain e

30S ribosomal protein S4