HL_9GHG_092

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

9GHG|1|a|U|627

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHG_092 not in the Motif Atlas

Homologous match to HL_5J7L_014

Geometric discrepancy: 0.0913

The information below is about HL_5J7L_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9GHG|1|a|G|625
9GHG|1|a|C|626
9GHG|1|a|U|627
9GHG|1|a|C|628
9GHG|1|a|A|629
9GHG|1|a|A|630
9GHG|1|a|C|631

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

30S ribosomal protein S4

Chain q

30S ribosomal protein S16