HL_9GHG_101

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

9GHG|1|a|G|1105

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHG_101 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.0676

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

18

Unit IDs

9GHG|1|a|G|1100
9GHG|1|a|U|1101
9GHG|1|a|U|1102
9GHG|1|a|A|1103
9GHG|1|a|A|1104
9GHG|1|a|G|1105
9GHG|1|a|U|1106
9GHG|1|a|C|1107

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

30S ribosomal protein S2

Chain h

30S ribosomal protein S7