HL_9GHH_014

3D structure

PDB id

9GHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

9GHH|1|A|G|457

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHH_014 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0579

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9GHH|1|A|G|456
9GHH|1|A|G|457
9GHH|1|A|A|458
9GHH|1|A|C|459
9GHH|1|A|C|460
9GHH|1|A|A|461
9GHH|1|A|U|462
9GHH|1|A|C|463

Current chains

Chain A

23S rRNA

Nearby chains